Pipelines

atlas

A set of tools that cover all programs necessary to obtain variant calls, estimates of heterozygosity and more from a BAM file.

coproID

CoproID helps you to identify the “true maker” of Illumina sequenced Coprolites/Paleofaeces by checking the microbiome composition and the endogenous DNA.

EAGER-CLI

A fully reproducible and state-of-the-art ancient DNA analysis pipeline.

EAGER-GUI

A fully reproducible and state-of-the-art ancient DNA analysis pipeline.

epiPALEOMIX

A fast, accurate, and automatic pipeline for generating nucleosome and methylation maps from high throughput sequencing data underlying ancient samples.

paleomix

Pipelines and tools for the processing of ancient and modern High-Throughput Sequencing (HTS) data.