Consensify method for error reduction in ancient DNA pseudohaploidisation.

A full probabilistic model for mapping ancient methylomes.

Method for dating admixture in ancient DNA specimens.

Software to call ROH from ancient and present-day DNA using reference haplotypes.

Infer biological relatedness from low coverage 2nd generation sequencing data.

A SNP filtering and SNP alignment generation tool, designed around (but not limited to) low coverage ancient DNA data.

A workflow for integrating ancient lineages into present-day phylogenies.

Compute postmortem damage patterns and decontaminate ancient genomes.

A method to infer the degree of relationship (up to second degree, i.e. nephew/niece-uncle/aunt, grandparent-grandchild or half-siblings) for a pair of low-coverage individuals.

Calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.