Scripts

3D-ORGAN

3D reconstruction of incomplete archaeological objects using a generative adversarial network (GAN).

Al2O3_AnalysisApp

Shiny app to analyse Al2O3:C measurements

Archaeological_Catalogue_from_CSV_Spreadsheet

A template to create an archaeological catalogue from a spreadsheet using the LaTeX csvsimple package.

artefact-morpho.R

R code for converting B&W jpgs of artefact silhouettes to matrices and computing basic Elliptical Fourier statistics, including PCA and MANOVA.

Artifact_Class_Diversity

Estimates artifact class diversity in multiple geographic regions.

BasicMapping

Working with map data in R.

benmarwickDY-XYZ-data-on-an-irregular-grid-to-an-interpolated-raster.r

Plotting remote sensing data, especially how to go from XYZ data on an irregular grid to an interpolated raster

benmarwickopencontext.r

Experimenting with the opencontext.org API using R

Binomial-Co-occurrence-Assessment

R script that implements a means for statistically assessing the degree of co-occurrence between classes within a dataset.

Bootstrap-Correspondence-Analysis

R-script for conducting and evaluating bootstrapped correspondence analyses.

Brainerd-Robinson-Similarity-Coefficient-and-Sampling-Error-Assessment

Script for calculating Brainerd-Robinson coefficients based on tabular count or percent data. This script also estimates the probability that a given difference between two samples is the product of sampling error.

ca

R Script for Seriation Using Correspondence Analysis.

ceramic-computation

R scripts for digitizing, processing, analyzing, and comparing archaeological ceramic 2d profile drawings, photographs, and other data.

Ceramic-Frequency-Date-Plot

This R script produces a exploratory visual for assessing site date ranges originally suggested to me by Wesley Bernardini Redlands University

CeramicApportioning

A method for chronological apportioning of ceramic assemblages that considers site occupation dates, ceramic production dates, and popularity distribution curves.

CloudCal

This app will allow you to build & apply calibrations for the Tracer & Artax series of XRF devices

cranial-sex-estimation-code

Data analysis implementation for evaluating a novel sex estimation method based on skullanalyzer data.

CSGR

Extracts and calculates from long bone cross sections, cortical thickness maps, and biomechanically pertinent cross-sectional geometric properties.

ElementSourcing

Source archaeological artifacts using elemental composition.

expotime

What is the correlation between the exposure time of your photographs and the time of the day?

findPeaks

A simple algorithm to find local maxima/minima in sequential data.

Fix-exif-artist

Fix the Exif.Image.Artist tag based on user input depending from the camera model. Useful if you have a bunch of photographs from different people all mixed up.

Ford-Diagram

This R Function creates a simple Ford diagram for archaeological seriation with error bars determined based on sample size were count data are given

frontiers-palaeo-additive-modelling

Modelling and feature detection in palaeoenvironmental time series using additive models.

Geostat

Code for Geostatistics in ethnographic contexts.

grups

A collection of Python and R scripts that can be used to simulate the pairwise genetic distances between human individuals in a provided test pedigree.

Kmeans

Script for conducting K-means cluster analysis using R. This script provides output designed to help the user select an appropriate cluster solution.

kriging

Codes for performing kriging for ethnographic and archaeological data.

LA_ICP_MS-Routines_FMNH

Routines to read and analyze LA-ICP-MS data from the Field Museum’s Elemental Analysis Facility

LISA

Moran’s I and Getis-Ord G* Analysis.

lithic3dslicer

.obj slicing for lithic 3d morphometrics.

long-bone-diaphyseal-CSG-Toolkit

A GNU Octave toolkit for analyzing diaphyseal long bone cross sectional geometry.

Mean-Ceramic-Date-and-Error-Estimation

Script for calculating mean ceramic dates based on tabular data. This script also estimates sampling error using a bootstrapping procedure.

missing

You have a sequence of numbered items and want to check if any are missing.

munsell-plot.R

Make a stratigraphic-style plot-schematic of sediment colour using munsell values

NAA analytical dashboard

Analytical Dashboard for conducting various analysis to group and assess groupings for Neutron Activation Analytical chemical compositional data

Near-Presence-Analysis

R script for analyzing presence/absence data in irregularly distributed archaeological survey units.

neiman1995

R Shiny Document - Visualizing model functions in Neimans ‘Stylistic variation in evolutionary perspective’ with an interactive document.

neolithicR

Shiny app to search and filter radiocarbon dates from various source databases, based on the R package c14bazAAR.

non-metric-trait-analysis

A set of GNU Octave functions for biodistance analysis based on non-metric traits.

osl_calibration.r

osl_calibration

osteometric-sorting

Tools for osteometric sorting of human remains.

p2pPerm

A function for retrieving metrics for resistance-resilience from rcarbon permTest objects.

PLC

Pure Locational Clustering.

PointPattern

Point Pattern Analysis.

pollen_data_processing

some tools in respect to pollen data processing.

qrcode-storage

Scripts to create QR-Code images for storage boxes. Each box has an associated web page describing its content, and the QR-Code serves as a short-link from the physical object to the web page.

QuARI

A database interface designed to facilitate the irregular, iterative, and non-linear workflows that are commonly employed in lithic analysis.

radiocarbon-scrapers

Scrapers for public radiocarbon databases

rti

Series of common tols used by most Reflectance Transformation Imaging (RTI) projects, plus some custom programs to help with the workflow from the camera to the output.

sdsbrowser

sdsbrowser is an R Shiny WebApp developed to make the available SDS datasets (following the Systematic and Digital Documentation of Stone Artefacts recording system) more accessible. It is designed to give you a quick overview on the spatial and temporal scope of sites previously analysed with SDS and the distribution of artefacts within these sites.

Sex.DetERRmine

Calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at specified SNPs.

shiny_Tldating

Shiny app for TL dating

skeletal-sex-estimation

A GNU Octave function for skeletal sex estimation.

skullanalyzer

A concrete way of extracting cranial mophometric features.

synthkat

Synthetic Categories for Archaeological Vessel Comparison.

Sériation de matrice en présence/absence

Excel file containing macro commands making it possible to transform a 1/0 table (presence / absence) into a graphic matrix treated by matrix permutations; it is possible to take into account the uncertain presence of a character. The instructions for use are contained in the file.

tosca

Tool for Online Seriation and Correspondence Analysis.

UnconstrainedClustering

Unconstrained Clustering.